After a hard drive replacement and game install for MAG all my trophies synced/were awarded in game again. Yep Facebook reflected it but in two messages, MAG awarded Ancient_One 10 PSN trophies, MAG awarded Ancient_One 3 PSN trophies.
That wasn't to bad I assumed they would list them individually.
- Destiny (PS4)
- Elder Scrolls Online Tamriel Unlimited (PS4)
- MASS Effect 1-2-3 (PS3)